Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------------------------MGAYNTAPKDLR-LIVFLGH---LTINNFIILYSIVSIIRNFMSIDKKLKILPNKVLIIVTLVPKDTEKMLQDD-KNSKFIMLIY-
4Q28 Chain:A ((2-111))
GHHHHHHSHMRRSIVVIHPDTGRELSPEEAHRAGLIDWNMFVKLRSQECDWEEISVKGPNGESSVIHDRKS-GKKFSI--EEALQSGRLTPAQYDRYVNKDMSIQELAVLVSG
General information:
TITO was launched using:
RESULT:
Template:
4Q28.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36015 for 424 contacts (-84.9/contact) +
2D Compatibility (PS) -7938 + (NN) -708 + (LL) 240
1D Compatibility (HY) 800 + (ID) 650
Total energy: -44271.0 ( -104.41 by residue)
QMean score : 0.201
(partial model without unconserved sides chains):
PDB file :
Tito_4Q28.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4Q28-query.scw
PDB file :
Tito_Scwrl_4Q28.pdb
: