Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSSLYLRSHSLSKLNSSLFAVNNNQNVEPRSDISTGLFKLKNSVYPPTFTMGSHLSNNKILPLYCQNHGHDNMQYYNIIIWITTMLKA
1D0G Chain:R ((21-61))
-----------------------------------------SSPSEGLCPPGHHISEDGRDCISCK-YGQDYSTHWNDLLFCLRCTRC
General information:
TITO was launched using:
RESULT:
Template:
1D0G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19209 for 236 contacts (-81.4/contact) +
2D Compatibility (PS) -4203 + (NN) -1196 + (LL) 2120
1D Compatibility (HY) 0 + (ID) 400
Total energy: -22888.0 ( -96.98 by residue)
QMean score : -0.031
(partial model without unconserved sides chains):
PDB file :
Tito_1D0G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1D0G-query.scw
PDB file :
Tito_Scwrl_1D0G.pdb
: