Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVQATYASISLPGISSVEDVLEDARFGKLFILVDDENRENEGDLIVLAEKLKPEHVAFMVRYGTGIVFLAMTRLHMGRLGLEFMRRSNIDEKLTPHTAFTTSIDARYGIATGVSAHDRTHTILTAIDGKSTQDDIITPGHVFPIIANDGGVLARNGHTEASVEIAKLIGYNHAAVGCELVNDDGSMMRLPELLKFAEQHNIKLTTIDKLIRYIKKLS
3LRJ Chain:A ((9-208))
--------FGTP-FERVELALDALREGRGVMVLD-----NEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMVENNTSAY---GTGFTVTIEAAEGVTTGVSAADRVTTVRAAIKDGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIAFAGQHNMAVVTIEDLVAYRQAH-
General information:
TITO was launched using:
RESULT:
Template:
3LRJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -134374 for 1630 contacts (-82.4/contact) +
2D Compatibility (PS) -21197 + (NN) -4842 + (LL) 1196
1D Compatibility (HY) -14000 + (ID) 4250
Total energy: -177467.0 ( -108.88 by residue)
QMean score : 0.458
(partial model without unconserved sides chains):
PDB file :
Tito_3LRJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LRJ-query.scw
PDB file :
Tito_Scwrl_3LRJ.pdb
: