Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKDPVLNAVTFLMVPLIILFALYIQFHGDYTPGGGFQAGIIIASGIILYSMLFGVSTTLKAIPYSAIKFTSMLGI-FIYGGTGIATVLLGQNFLSYDILLANNVAGQKLGIFLVELGVALTVCSSMLIIYIDFARRKK
2G27 Chain:A ((83-146))
-----------------------------------GFLSQDIITVGGITVTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIF-DNIISQGVLKEDVFSFYYNRDSLGGQIVLGGSDPQHYEGNFHYINLIK
General information:
TITO was launched using:
RESULT:
Template:
2G27.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42073 for 317 contacts (-132.7/contact) +
2D Compatibility (PS) -6437 + (NN) 628 + (LL) 2548
1D Compatibility (HY) -4800 + (ID) 1000
Total energy: -51134.0 ( -161.31 by residue)
QMean score : -0.185
(partial model without unconserved sides chains):
PDB file :
Tito_2G27.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2G27-query.scw
PDB file :
Tito_Scwrl_2G27.pdb
: