Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLDHSTSYGLITNIRPSPSWLSKLSFWRKKTLLISQFRTSVALYVNENNHILNAIKGSSLSKILDRVNIRDKDGLSALHLTVKGGNVNIVKLLLDGGAEPNIRSWMNLTTPLHNAVLNNRVYIVKLLFDSHANSNILSRSDISPLYFAVVNN
4RLV Chain:A ((401-475))
------------------------------------------------------------------------DYLTALHVAAHCGHYRVTKLLLDKRANPNARA-LNGFTPLHIACKKNRIKVMELLVKYGASIQAITESGLTPIHVAAFMG
General information:
TITO was launched using:
RESULT:
Template:
4RLV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33239 for 581 contacts (-57.2/contact) +
2D Compatibility (PS) -8177 + (NN) -6229 + (LL) 4940
1D Compatibility (HY) -5200 + (ID) 1450
Total energy: -49355.0 ( -84.95 by residue)
QMean score : 0.452
(partial model without unconserved sides chains):
PDB file :
Tito_4RLV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RLV-query.scw
PDB file :
Tito_Scwrl_4RLV.pdb
: