Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKVLVIGSGGREHALLWTLKKSPILTELYITPGRPAMGNLGVLVNINIQNSIDMTRFCKRENIELVIIGPEQPIIDGLADNLVAEGINVFAPSQAAAKLEASKSFTKGICKQYGIPTAKYECFVDERLAKSFVRSNKIKFPLVVKANGIAAGKGVIVCNTENEAFSAIDSMLVEKKFGESGEEIIIEEFLVGEEVSFFALVDGLKVVTLGCAKDYKRVDENNDSRNTGGMGSYSSPSIISKDMEQKIIQRIIYPTIQALANMGTPYRGVLFAGLITCKDSPKLLEYNVRFGDPEAQSMLPRFDASCDLLELMLSVAKGKLSAKTVELNSKA-TVCVVVASKGYPGDYQKGEIIKGLAKIESIPGV-LVFHAGTKLDESGNWVSDGGRVLNIVGEGNTLEEAKSKVYSALNFLEWPGGFFRYDIGS |
1VKZ Chain:A ((16-410)) | VRVHILGSGGREHAIGWAFAKQGY--EVHFYPGNAGTKRDGTNHPYEGEKTL---KAIPEEDI--VIPGSEEFLVE-----RS----NVFGPVKEVARLEGSKVYAKRFMKKYGIRTARFE--VAETPEELREKIKKFSPPYVIKADGLARGKGVLILDSKEETIEKGSKLIIGELIKGVKGPVVIDEFLAGNELSAMAVVNGRNFVILPFVRDYKRLMDGDRGPNTGGMGSWGPVEIPSDTI--KKIEELFDKTLWGVEKEGYAYRGFLYLGLMLHDGDPYILEYNVRLGDPETEVIV-----TLNPEGFVNAVLEGYRGGKMEPVEPRGFAVDVVLAARGYPDAPEKGKEI-------TLPEEGLIFFAGV-AEKDGKLVTNGGRVLHCMGTGETKEEARRKAYELAEKVHFEGKTYRRDIA- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VKZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -217079 for 3431 contacts (-63.3/contact) +
2D Compatibility (PS) -42886 + (NN) -19458 + (LL) 2012
1D Compatibility (HY) -25200 + (ID) 6750
Total energy: -309361.0 ( -90.17 by residue)
QMean score : 0.478
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