Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTINWQAKDPEGNSINCSMTVKVGSGGIQSATGGFGVSKFKSPLPEGKKSEILKLVEQNKEVFISGKTLYKAFTDVGQSVDD
2F4M Chain:B ((39-54))
-------------------------------------------------PQLLQQISQHQEHFIQMLNEPVG----------
General information:
TITO was launched using:
RESULT:
Template:
2F4M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -736 for 61 contacts (-12.1/contact) +
2D Compatibility (PS) -1717 + (NN) -542 + (LL) 1780
1D Compatibility (HY) -1200 + (ID) 250
Total energy: -2665.0 ( -43.69 by residue)
QMean score : 0.918
(partial model without unconserved sides chains):
PDB file :
Tito_2F4M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2F4M-query.scw
PDB file :
Tito_Scwrl_2F4M.pdb
: