Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPELPEVEIISNFLFDKIKNKQISGVTVNNWNL-RVPI-TQNIDDVIKGKVINNIKRRGKYIIWHIDNDIVVTVHLGMSGKLIYAKGEQAQNKHDHVIFSFSDNTSIIFNDPRKFGLVIILNKEQ--EVNFFNDFGIEPFTDEFNGDYLQKLLKSKKVNIKSALMNNKLIVGIGNIYASESLFRARISPLRSAQDLTYKECEKLATEIKNTLSDAIIAGGSTLKDYAQPSGSVGYFQNSFYVYGKVQKPCKICNNTITLIRQNGRSTYFCNACQN
3GPP Chain:A ((1-273))
-PELPEVETIRRTLLPLIVGKTIEDVRIFWPNIIRHPRDSEAFAARMIGQTVRGLERRGKFLKFLLDRDALIS-HLRMEGRYAVASALEPLEPHTHVVFCFTDGSELRYRDVRKFGTMHVYAKEEADRRPPLAELGPEPLSPAFSPAVLAERAVKTKRSVKALLLDCTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVATIGEAVM----------------------LYVYGRQGNPCKRCGTPIEKTVVAGRGTHYCPRCQR
General information:
TITO was launched using:
RESULT:
Template:
3GPP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141658 for 1951 contacts (-72.6/contact) +
2D Compatibility (PS) -26763 + (NN) -11733 + (LL) 632
1D Compatibility (HY) -16400 + (ID) 4350
Total energy: -200272.0 ( -102.65 by residue)
QMean score : 0.571
(partial model without unconserved sides chains):
PDB file :
Tito_3GPP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GPP-query.scw
PDB file :
Tito_Scwrl_3GPP.pdb
: