Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFVNGGQLKKINQKWLIIGTGLLLFMMMLPSIILLAKMTIGLVMVLVVAIAIKIASKTISNVLEDKQADPNQLTSQTTQSRIINLAVGLVSIFTGGLSLLIIAKTGIAVICAAVVTLAIYEYAKDYKYAEDKEIGKSINDKLDEIAKNTTNFIVSGIEKLVSPQEQQV
2OER Chain:A ((21-65))
---------------------------------------------------------------------------SELVASILEAAVQV--------QRF---TTARVAERAGVSIGSLYQYFPNKAAILFRLQSDEWRRTTRLLGEILEDTTRPPLERLRRLVLAFV
General information:
TITO was launched using:
RESULT:
Template:
2OER.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27680 for 219 contacts (-126.4/contact) +
2D Compatibility (PS) -3714 + (NN) 1895 + (LL) 8144
1D Compatibility (HY) -400 + (ID) 400
Total energy: -22155.0 ( -101.16 by residue)
QMean score : 0.368
(partial model without unconserved sides chains):
PDB file :
Tito_2OER.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OER-query.scw
PDB file :
Tito_Scwrl_2OER.pdb
: