Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MYKALITCFIFLVCSFTRSYASDDVHLEKSETELYEEAVELFDQKKYKQAIRAFRKIEDLYPFSYWAMKAKLLSGISHY-NMDDYSSAASDMDDYIYIYPNGEDLPYVYYLRVLSYYMQINRVQLGQQTAYKALELAAEYVNLFSESEYIEEMKEKVRLITDHILKKEYSIGKFYFRRGEYLAAIKRFQNII-SSKDYSYFPRSINYLIAAYSALGLDLEAGQYESLLAENLKENTVEQ |
2VQ2 Chain:A ((40-217)) | ----------------------------KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS---AEINNNYGWFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQG--------QFGLAEAYLKRSLAAQPQF-----------------PPAFKELARTKMLAGQLGDADYYFKKYQSRVEVL--QADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VQ2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -86856 for 1384 contacts (-62.8/contact) +
2D Compatibility (PS) -19196 + (NN) -10664 + (LL) 5868
1D Compatibility (HY) 5600 + (ID) 1250
Total energy: -106498.0 ( -76.95 by residue)
QMean score : 0.503
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