Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMMNIPNIENCDLHGKAVLLRVDFNIPIKNGKVHDATRVLRSLPTIRHLVNAGAK-VIIISHFGRPRA--KDNNLSLKNVVKTLSQLLNKEVKFVDDCIGKKVQKVVNAIAIRDVILLENLRFYKEEEQNDAN---------------FAKQLASLADVYVNDAFSCSHRAHASISRITEFLPSYA-GFCLQDELRYLEKAVSFEAKPITAIVGGAKISTKIKMLIRLAEKVDYLVLGGAIANNFLL-FNKVNIGKSFFQNGVDSLLHDVVKIADKNNCKIVIPEDVLIAVNSDYSTCILRKT-ESVLDNDVI-LDIGPQTLSTISSIVASSKALLWNGPIGVFEHSAFANGTIEVMKVVSDSTHKGKLTSVIGGGDSLSAINAAGLTDKDFTYVSTGGGAFLSWLSGDKMPGIAALQSMLN
2PAA Chain:A ((8-416))------LDKVDLKGKRVIMRVDFNVPMKNNQITNNQRIKAAIPSIKHCLDNGAKSVVLMSHLGRPDGIPMPDKYSLEPVADELKSLLNKDVIFLKDCVGPEVEQACANPDNGSIILLENLRFHVEEEGKGKDSSGKKISADPAKVEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVN--LPQKASGFLMKKELDYFSKALEKPERPFLAILGGAKVKDKIQLIKNMLDKVNFMIIGGGMAYTFLKELKNMQIGASLFDEEGATIVKEIMEKAEKNGVKIVFPVDFVTGDKFDENAKVGQATIESGIPSGWMGLDCGPESIKINAQIVAQAKLIVWNGPIGVFEWDAFAKGTKALMDEVVKATSNGCVT-IIGGGDTATCCAKWGTEDK-VSHVSTGGGASLELLEGKILPGVEALSNM--


General information:
TITO was launched using:
RESULT:

Template: 2PAA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -322862 for 3415 contacts (-94.5/contact) +
2D Compatibility (PS) -40691 + (NN) -8242 + (LL) 548
1D Compatibility (HY) -37600 + (ID) 7950
Total energy: -416797.0 ( -122.05 by residue)
QMean score : 0.567

(partial model without unconserved sides chains):
PDB file : Tito_2PAA.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2PAA-query.scw
PDB file : Tito_Scwrl_2PAA.pdb: