Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKSKVLSIFACFLISFSSYANMFDWGTRKVSDTNTYVCNCNQGLADLVEELIPAVVNISSEQIIKQENNNRTKTPSFAPRNNFFDDFREFFEHFDQFFTDRNPSINREVVLLGSGFIIDKS-GTIVTNYHVIKNAQDITVTMNDNTYFKAEVLGYDARTDLAVLKIKADKDLSFVTFSNSDKARVGDTVMAIGNPFGLGG--SVSTGIISARSRDISIGTTSEFIQTDAAINRGNSGGPLFDLNGKVIGINTAIYSPSESGGNVGIGFAIPSNLAISIIDTLKSGKKIKHGWLGVQVQPITREFAESLGL-KDVKGALVANIVKDSPAEKGGIKVGDILLEFDGKKIDRMTQLPQMVSRTEPGKKVQIKLLRKGKEVNVKVVIEESVNDSKDSNTEENRSISDYITGLTVSNLPKEPKESKNDTPIKGVIVTNVDSNSNATLRGIKKGDIIIQLDGVDIENTENFQKQVDLAIKKSGKDSIMLLIYRNGNQFFTSIKLKK |
| 3PV2 Chain:A ((9-435)) | -------------------------------------------MAPVLKNIMPAIVNVAVQGYLPN----------------------------------------RKFESIGSGVIIDPNNGVIITNDHVIRNASLITVTLQDGRRLKARLIGGDSETDLAVLKIDA-KNLKSLVIGDSDKLEVGDFVVAIGNPFGL--SQSATFGIVSALK---------NFIQTDAAINPGNSGGALVNAKGELIGINTAIL--------VGIGFAIPINMVKDVAQQIIKFGSIHRGLMGIFVQHLTPELAQAMGYPEDFQGALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISLLRVGSTVKIIVERDNKPLTLSAV----VTDIK-SHEQKLQSNNPFLYGLALRAFEQESPPHGN---VIGVQVVGASENSAGWRAGIRPGDIIISANKKPVTDVKSLQ-----TIAQEKKKELLVQVLRGPGSMYLLVI--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PV2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -205717 for 3017 contacts (-68.2/contact) +
2D Compatibility (PS) -40939 + (NN) -12033 + (LL) 4144
1D Compatibility (HY) -32800 + (ID) 7600
Total energy: -294945.0 ( -97.76 by residue)
QMean score : 0.488
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