Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLDIRLFR----NEPDTVKSKIELRGDDPKVVDEILELDEQRRKLISATEEMKARRNKVSEEIALKKRNKE---------NADDVIAE------------MRTLGDD-IKEKDSQLNEIDNKMTGILCRIPNLISDDVP-QGESDEDNVEVKKWG--TPREFSFEPKAHWDIVEELKMADFDRAAKVSGARFVYLTNEGAQLERALMNYMITKHTTQHGYTEMMVPQLVNADTMYGTGQLPKFEEDLFKVEKEGL---YTIPTAEVPLTNFYRNEIIQPGVLPEKFTGQSACFRSEAGSAGRDTRGLIRLHQFDKVEMVRFEQPED--SWNALEEMTTNAEAILEELGLPYRRVILCTGDIGFSASKTYDIEVWLPSYNDYKEISSCSNCTDFQARRANIRFKRDKAA--KPELAHTLNGSGLAVGRTFAAIVENYQNEDGTVTIPEALVPFMGGKTQISKPVK |
3VBB Chain:A ((2-460)) | VLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLCSKTIGEKMKKKEDESVPENVLSFDDLTADALANLKVSQIKKVRLLIDEAILKCDAERIKLEAERFENLREIGNLLHPSVPISNDEDVDNKVERIWGDCTVRK----KYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYAL-RTLGSRGYIPIYTPFFMRKEVMQEVAQLS-FDEELYKVI----DEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEVGS----TRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYHIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQT---MDKVEFVHMLNATMCATTRTICAILENYQTEKG-ITVPEKLKEFM----------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VBB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -96806 for 3125 contacts (-31.0/contact) +
2D Compatibility (PS) -42844 + (NN) -20101 + (LL) 1276
1D Compatibility (HY) -29200 + (ID) 7600
Total energy: -195275.0 ( -62.49 by residue)
QMean score : 0.416
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