Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----------MSVLKWVSSYNNERDAWFVLYPPSKASSCFTLIVDVALFSE-----------------
2JMS Chain:A ((1-63))
TDPEEHFDPNTNC-----DYTNSQDAWDYCTNYIVNSSCGEICCNDCFDETGTGACRAQAFGNSCLNW
General information:
TITO was launched using:
RESULT:
Template:
2JMS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21724 for 191 contacts (-113.7/contact) +
2D Compatibility (PS) -3885 + (NN) -2010 + (LL) 560
1D Compatibility (HY) -1600 + (ID) 400
Total energy: -29059.0 ( -152.14 by residue)
QMean score : 0.289
(partial model without unconserved sides chains):
PDB file :
Tito_2JMS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JMS-query.scw
PDB file :
Tito_Scwrl_2JMS.pdb
: