Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------------------------MEDLKESLKSLGWWDLFFAIPMFLLFAYLP-NYNFITIFLNIVIIIFFSIGLILTTHIIIDKIKSNTK----
2KJG Chain:A ((1-99))
MSILEDPEFVKLRQFKGKVNFNLVMQILDEIELDLRGSDNIKTSIIYVYSSHLDEIRKNKEFYDMIAEILQRYYKKIGIENVNQLILTTIKLEHHHHHH
General information:
TITO was launched using:
RESULT:
Template:
2KJG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70079 for 414 contacts (-169.3/contact) +
2D Compatibility (PS) -7049 + (NN) -3319 + (LL) 0
1D Compatibility (HY) -3200 + (ID) 450
Total energy: -84097.0 ( -203.13 by residue)
QMean score : 0.467
(partial model without unconserved sides chains):
PDB file :
Tito_2KJG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KJG-query.scw
PDB file :
Tito_Scwrl_2KJG.pdb
: