Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKVLYITAHPFNELVSNSMAAGKAFIETYQQQHPDDEVKHIDLFETYIPVIDKDVLTGWGKMSNGETLTDDEQMKVSRLSDILEEFLSADKYVFVTPMWNLSFPPVVKAYIDAISIAGKTFKYSAEGPQGLLTDKKVLHIQSRGGYYTEGPAADFEMGDRYLRTIMTFLGVPSYETIIIEGHNAEPHKTEEIKATSINNAEKLATTF
2Z9C Chain:A ((24-175))
-------------------------FVEQWREKHSADEITVRDLAANPIPVLDGE-LVGALR---AP-LTPRQQEALALSDELIAELKAHDVIVIAAPMYNFNISTQLKNYFDLVARAGVTFRYTENGPEGLVTGKKAIVITSRGGIHKDGPT---DLVTPYLSTFLGFIGITDVKFVFAEG--------------------------
General information:
TITO was launched using:
RESULT:
Template:
2Z9C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73124 for 979 contacts (-74.7/contact) +
2D Compatibility (PS) -16351 + (NN) -7076 + (LL) 4432
1D Compatibility (HY) -12000 + (ID) 2550
Total energy: -106669.0 ( -108.96 by residue)
QMean score : 0.557
(partial model without unconserved sides chains):
PDB file :
Tito_2Z9C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Z9C-query.scw
PDB file :
Tito_Scwrl_2Z9C.pdb
: