Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHNDLK---EVLLTEEDIQNICKELGAQLTKDYQ--GKPLVCVGILKGSAMFMSDLIKRIDTHLSIDFMDVSSYHGGTESTGEVQIIKDLGSSIENKDVLIIEDILETGTTLKSITELLQSRKVNSLEIVTLLDKPNRRKADIEAKYVGKKIPDEFVVGYGLDYRELYRNLPYIGTLKPEVYSN
1G9S Chain:A ((5-175))
----MKHTVEVMIPEAEIKARIAELGRQITERYKDSGSDMVLVGLLRGSFMFMADLCREVQVSHEVDFMTASS--------RDLKILKDLDEDIRGKDVLIVEDIIDSGNTLSKVREILSLREPKSLAICTLLDKPSRREVNVPVEFIGFSIPDEFVVGYGIDYAQRYRHLPYIG---------
General information:
TITO was launched using:
RESULT:
Template:
1G9S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123155 for 1212 contacts (-101.6/contact) +
2D Compatibility (PS) -16824 + (NN) -774 + (LL) 500
1D Compatibility (HY) -21200 + (ID) 3900
Total energy: -165353.0 ( -136.43 by residue)
QMean score : 0.530
(partial model without unconserved sides chains):
PDB file :
Tito_1G9S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1G9S-query.scw
PDB file :
Tito_Scwrl_1G9S.pdb
: