Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVLNLGSKKQASFYVACELYKEM-AF----NQHCKLGLATGGTMTDLYEQLVKLLNKNQLNVDNVSTFNLDEYVGLTASHPQSYHYYMDDMLFKQYPYFNRKNIHIPNGDADDMNAEASKYNDVLEQQGQRDIQILGIGENGHIGFNEPGTPFDSVTHIVDLTESTIKANSRYFKNE-DDVPKQAISMGLANILQAKRIILLAFGEKKRAAITHLLNQEISVDVPATLLHKHPNVEIYLDDEACPKNVAKIHVDEMD
1FSF Chain:A ((1-243))
MRLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEMHKAGQVSFKHVVTFNMDEYVGLPKEHPESYYSFMHRNFFDHVD-IPAENINLLNGNAPDIDAECRQYEEKIRSYGKIHLFMGGVGNDGHIAFNEPASSLASRTRIKTLTHDTRVANSRFFDNDVNQVPKYALTVGVGTLLDAEEVMILVLGSQKALALQAAVEGCVNHMWTISCLQLHPKAIMVCDEPS--------------
General information:
TITO was launched using:
RESULT:
Template:
1FSF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -133105 for 2000 contacts (-66.6/contact) +
2D Compatibility (PS) -25833 + (NN) -15401 + (LL) 992
1D Compatibility (HY) -20000 + (ID) 3950
Total energy: -197297.0 ( -98.65 by residue)
QMean score : 0.596
(partial model without unconserved sides chains):
PDB file :
Tito_1FSF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FSF-query.scw
PDB file :
Tito_Scwrl_1FSF.pdb
: