Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAIAVLLNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEEDMSSASDLKAQFYRGTLQRFYQSLHAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILHQRSLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYRKWRPYLRHRDVYHYDLKSFEDFVIASPDDLVFDDIAFGSSQVIEQNKWQHFLDQDIQNYESGRDYLPEVLTSQLSVALAYGLLDIIEIFNDLLARYDEDEANHEA---FIRELIFREFYYVLMTQYPETSYQAFKPKYRQIKWSQNEANFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTKDLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKALYIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKALD |
2J08 Chain:A ((133-397)) | ---------------------------------------------------------------------------------------------------------------------------------------------YRVYTPFSRLYRGAAPPLPPPEALPKGPEEGEIPR-EDPGLPLPEPGEEAALAGLR--AFLEAKLPRYAEERDRLDGEGGSRLSPYFALGVL------SPRLAAWEAERRGGEGARKWVAELLWRDFSYHLLYHFPWMAERPLDPRFQAFPWQEDEALFQAWYEGKTGVPLVDAAMRELHATGFLSNRARMNAAQFAVKHLLLPWKRCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNPVLQGERHDPEGRWLKRWAPEYPSYAPK--------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2J08.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -99822 for 1955 contacts (-51.1/contact) +
2D Compatibility (PS) -27014 + (NN) -5045 + (LL) 15680
1D Compatibility (HY) -12000 + (ID) 4550
Total energy: -132751.0 ( -67.90 by residue)
QMean score : 0.322
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