Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ------MGIVFNYIDPVAFNLGPL---------SVRWYGIIIAVGILLGYFVAQR--------ALVKAGLHKDTLVDIIFYSALFGFIAARIYFVIFQWPYYAENPSEIIK-------IWHGGIAIHGG--------------LIGGF-IAGVIVCKVKNLNPFQIGDIVAPSIILA---------QGIGRWGNFMNHEAHGGPVSRAFLEQLHLPNFIIENMYINGQYYH--PTFLYES---IWDVAGFIILVNIRKHLKLGETFFLYLTWYSIGRFFIEGLRTDSLMLTSNIRVAQLVSILLILISISLIVYRRI--KYNPPLYSKVGALPWPTKKVK---- |
| 4YLR Chain:A ((9-453)) | TITANVAGTKFEIVRLVIDEMGFMKTPDEDETSNLIWCDSAVQQEKISELQNYQRINHFPGMGEICRKDFLARNMTKMIKSRPLDYTFVPRTWIFPAEYTQFQNYVKELKKKRKQKTFIVKPISLIRNSQDHLIVQEYIEKPFLMEGYKFDLRIYILVTSCDPLKIFLYHDGLVRMGTEKYIPGSKRSIKWFTEFLQANQHDVAKFWSDISELVVKTLIVAEPHVLHAYRMCRPGQPPGSESVCFEVLGFDILLDRKLK-----PWLLQINRAP-------SFGTDQ-KIDYDVKRGVLLNALKLLNIRTMGNYRRIYPPEDKALLEKYENLLAVAFQTFLSGR |
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General information:
TITO was launched using:
| RESULT:
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Template: 4YLR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -191039 for 1826 contacts (-104.6/contact) +
2D Compatibility (PS) -26767 + (NN) 14420 + (LL) 1228
1D Compatibility (HY) -12800 + (ID) 2300
Total energy: -217258.0 ( -118.98 by residue)
QMean score : 0.056
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