Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRKTYEKIANINGMFNMLEQQIIHSQDMAHFRSEFFYVNHEHRENYEALLIYYKNSIDNPIVDGACYILALPEIFNSVDVFESELP-FSWVYDENGITETMKSLSIPLQYLVAAALEVTDVNIFKPSGFTMGMNNWNIAQMRIFWQYTAIIRKEAL
3U4V Chain:A ((199-314))
--------NFNIGSLSDQLSKQTLLISQLQVGKNRF-------SFKFEGRVVYKSSTFQNQ--QDSKYFF-----ITAQDANNQEINMSFW----QKVDQSYQTLKVGQYYYFIGG-EVKQFK--------------NNLELKFKFGDYQIIPKETL
General information:
TITO was launched using:
RESULT:
Template:
3U4V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25159 for 771 contacts (-32.6/contact) +
2D Compatibility (PS) -11481 + (NN) 5388 + (LL) 3040
1D Compatibility (HY) -1200 + (ID) 900
Total energy: -30312.0 ( -39.32 by residue)
QMean score : 0.078
(partial model without unconserved sides chains):
PDB file :
Tito_3U4V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3U4V-query.scw
PDB file :
Tito_Scwrl_3U4V.pdb
: