Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNFNKLKFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKA----LNQLGQKCDVITYEFENISAQQLKLLCEKYNIPQGYQAIQLLQDRLTEKETLKSAGTKVVPFISVKESTDIDKAIETLGYPFIVKTRFGGYDGKGQVLINNEKDLQEGFKLIETSE--CVAEKYLNIKKEVSLTVTRGNNNQITFFPLQENEHRNQILFKTIVPARIDKTAEAKEQVNKI-IQSIHFIGTFTVEFFIDSNNQLYVNEIAPRPHNSGHYSIEACDYSQFDTHILAVTGQSLPNSIELLKPAVMMNLLG-----KDLDLLENEFNEHPEWHLHIYGKSGRKDSRKMGHMTVLTNDVNQTEQDMYAKFEGSN |
| 4MA5 Chain:A ((3-345)) | -----------IGIIGAGQLARMLSLAGTPLGLEFHCLGKNGDC-----AEEVVKTVTDIELTKVNDVVAWAKQFDVITFENENISHELIKAINHEVSVYPSAKAIAISQDRLLEKSFMQDHGIATAKFVNIDSLAKLQSAVDDHGLPAILKTRRFGYDGKGQFVIRSQEDITKAWDVLKDAPDGLIYEAFVDFDYEVSQICTADLKGNIAFYPLARNTHKQGIIVESEAPFENVVLAEKAQQIAKILVKEFAYVGTLAIEFFV-K--ELIVNEIAPRVHNSGHWSIDGAVTSQFENHVRAIAGLILGDTTS--RKTVMLNCIGGMPATKDLAALD-------RVKIHSYNKEPRK-GRKVGHLNLNLND---------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4MA5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -104292 for 2773 contacts (-37.6/contact) +
2D Compatibility (PS) -36308 + (NN) -17507 + (LL) 1960
1D Compatibility (HY) -28000 + (ID) 5850
Total energy: -189997.0 ( -68.52 by residue)
QMean score : 0.444
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