Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLTMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLAAPQINISKRMIAVLIPDDGSGKSYDY--MLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDKNHPLQPHTDAVEV
2AIA Chain:A ((13-193))
LIDMCDIIREGNPSLRTVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQLDISKRIIAVLVPN-----AYDLEAIMYNPKIVSHSVQDAALGEGEGCLSVDRNVPGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRINEKDPF---------
General information:
TITO was launched using:
RESULT:
Template:
2AIA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80594 for 1310 contacts (-61.5/contact) +
2D Compatibility (PS) -17675 + (NN) -3034 + (LL) 248
1D Compatibility (HY) -19600 + (ID) 4650
Total energy: -125305.0 ( -95.65 by residue)
QMean score : 0.745
(partial model without unconserved sides chains):
PDB file :
Tito_2AIA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2AIA-query.scw
PDB file :
Tito_Scwrl_2AIA.pdb
: