Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKPIGVIDSGVGGLTVAKEIMRQLPNETIYYLGDIGRCPYGPRPGEQVKQYTVEIARKLMEFDIKMLVIACNTATAVALEYLQKTLSIPVIGVIEPGARTAIMTTRNQNVLVLGTEGTIKSEAYRTHIKRINPHVEVHGVACPGFVPLVEQMRYSDPTITSIVIHQTLKRWRNSESDTVILGCTHYPLLYKPIYDYFGGKKTVISSGLETAREVSALLTFSNEHASYTEHP-DHRFFATGDPTHITNIIKEWLNLSVNVERISVND
2OHV Chain:A ((4-264))
--RPIGFLDSGVGGLTVVCELIRQLPHEKIVYIGDSARAP-----KKQIKEYTWELVNFLLTQNVKMIVFACNTATAVAWEEVKAALDIPVLGVVLPGASAAIKSTTKGQVGVIGTPMTVASDIYRKKIQLLAPSIQVRSLACPKFVPIVESNEMCS-SIAKKIVYDSLAPLVG-KIDTLVLGCTHYPLLRPIIQNVMGPSVKLIDSGAECVRDISVLLNYFDINGNYHQ-AVEHRFFTTANPEIFQEIASIWLKQKINVEHVTL--
General information:
TITO was launched using:
RESULT:
Template:
2OHV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -231605 for 2286 contacts (-101.3/contact) +
2D Compatibility (PS) -27129 + (NN) -3543 + (LL) -412
1D Compatibility (HY) -28000 + (ID) 5500
Total energy: -296189.0 ( -129.57 by residue)
QMean score : 0.609
(partial model without unconserved sides chains):
PDB file :
Tito_2OHV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OHV-query.scw
PDB file :
Tito_Scwrl_2OHV.pdb
: