Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKSNKSLAMIVVAIIIVGVLAFQFMNHTGPFKKGTNHETVQDLNGKDKVHVQRVVDGDTFIANQNGKEIKVRLIGVDTPETVKPNTPVQPFGKEASNYSKKTLTN-QDVYLEYDK-EKQDRYGRTLAYVWISKDRMYNKELVEKGLAREKY-FSPNGKYRNVFIEAQNKAKQQKLNIWSK
4K8J Chain:A ((3-135))
---------------------------------------------KEPATLIKAIDGDTLKLMYKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMIENAKKIEVEFDKGQRTDKYGRGLAYIY-ADGKMVNEALVRQGLAKVAYVYKPNNTHEQHLRKSEAQAKKEKLNIWS-
General information:
TITO was launched using:
RESULT:
Template:
4K8J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 13478 for 999 contacts (13.5/contact) +
2D Compatibility (PS) -14165 + (NN) -7559 + (LL) 3588
1D Compatibility (HY) -9200 + (ID) 2550
Total energy: -16408.0 ( -16.42 by residue)
QMean score : 0.479
(partial model without unconserved sides chains):
PDB file :
Tito_4K8J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4K8J-query.scw
PDB file :
Tito_Scwrl_4K8J.pdb
: