Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIRLGKMSDLDQILNLVEEAKELMKEHDNEQWD-----DQYPLL--EHFEEDIAKDYLYVLEENDKIYGFIVVDQDQAEWYDDIDWPVNREGAFVIHRLTGSKEYKGA--ATELFNYVIDVVKARGAEVILTDTFALNKPAQGLFAKFGFHKVGEQLMEYPPYDKGEPFYAYYKNLKE
1MK4 Chain:A ((3-124))
------------IRTITSSDYEMVTSVLNEWWGGRQLKEKLPRLFFEHFQ-----DTSFITSEHNSMTGFLIGFQSQSD----------PETAY-IHFSGVHPDFRKMQIGKQLYDVFIETVKQRGCTRVKCVTSPVNKVSIAYHTKLGF----------------------------
General information:
TITO was launched using:
RESULT:
Template:
1MK4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67804 for 733 contacts (-92.5/contact) +
2D Compatibility (PS) -11984 + (NN) -3965 + (LL) 3292
1D Compatibility (HY) -5600 + (ID) 1600
Total energy: -87661.0 ( -119.59 by residue)
QMean score : 0.513
(partial model without unconserved sides chains):
PDB file :
Tito_1MK4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MK4-query.scw
PDB file :
Tito_Scwrl_1MK4.pdb
: