Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVDVAFVCLGNICRSPMAEAIMRQRLKDRNIHD-IKVHSRGTGSWNLGEPPHEGTQKILNKHNIPFDGMISELFEATDDFDYIVAMDQSNVDNIKSINPNLKGQLFKLLEF---SNMEESDVPDPYYTNN--FEGVYDMVLSSCDNLIDYIVKDANLKEG
1U2Q Chain:A ((7-153))
---VTFVCTGNICRSPMAEKMFAQQLRHRGLGDAVRVTSAGTGNWHVGSCADERAAGVLRAHGYPTDHRAAQVGTEHLAADLLVALDRNHARLLRQLGVE-AARVRMLRSFDPRSGTHALDVEDPYYGDHSDFEEVFAVIESALPGLHDWV---------
General information:
TITO was launched using:
RESULT:
Template:
1U2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84272 for 1182 contacts (-71.3/contact) +
2D Compatibility (PS) -14874 + (NN) -6989 + (LL) 916
1D Compatibility (HY) -11200 + (ID) 2450
Total energy: -118869.0 ( -100.57 by residue)
QMean score : 0.454
(partial model without unconserved sides chains):
PDB file :
Tito_1U2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1U2Q-query.scw
PDB file :
Tito_Scwrl_1U2Q.pdb
: