Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKFFFIGLLVFVVFFTAATIIWFSYDKNKYGTKQYDKTFKD-DAFDNVSINLDSTELRIKRGNQFRVKYDGDNDILINIVDKT----LKISDKRSKTRGYAIDMNPFHENKKTLTIEMPDKMIKRLNLSSGAGSVRISDVDLENT-SIQ-SINGEVVIKNSNLDALDSKTN-NSSTYISKSNIKNSNIKVVI---GTLQIDKSQIKQSIFLNDHGDIEFKNMPSKVDAKASTKQGDIRFKYDSKPEDTILKLNPGTGDSVVKNKTFTNGKV-GKSDNVLEFYTIDGNIKVE- |
3JX8 Chain:A ((4-250)) | --------------------------DKRIDGNGNPETREIKISDYDEITFVGSADFEYEQSDKAPYLSVTIDENLFDYLVTEVEGGTLKIYPKSIKKGF---NNNSYDLRPTVYKIKSNSKELKELNTV-GSGSFIISKPTKVNRMEINMAGSGNVELRG-PVKGYKLECNMAGSGNIIAKDIQLDNLSCSLASSGEIEVIGTVDRASFNVAGSGEIKAFDCQARKAECNIASSGEISVYATQILDANIV----GSGEIHYKGDPEISKSIMG-----------SGSINKVK |
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General information:
TITO was launched using:
| RESULT:
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Template: 3JX8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 80796 for 1915 contacts (42.2/contact) +
2D Compatibility (PS) -24175 + (NN) 1745 + (LL) 4476
1D Compatibility (HY) -6000 + (ID) 2200
Total energy: 54642.0 ( 28.53 by residue)
QMean score : 0.199
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