Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKKLLMNFFIVSPLLLATIATDFTPVPLSSNQIIKTAKASTNDNIKDLLDWYSSGSDTFTNSEVLDNSLGSMRIKNTDGSISLIIFPSPYYSPAFTKGEKVDLNTKRTKKSQHTSEGTYIHFQISGVTNTEKLPTPIELPLKVKVHGKDSPLKYWPKFDKKQLAISTLDFEIRHQLTQIHGLYRSSDKTGGYWKITMNDGSTYQSDLSKKFEYNTEKPPINIDEIKTIEAEIN
3TSS Chain:A ((5-194))
--------------------------------------------NIKDLLDWYSSGSDTFTNSEVLDNSLGSMRIKNTDGSISLIIFPSPYYSPAFTKGEKVDLNTKRIKKSQHTSEGTWIHFQISGVTNTEKLPTPIELPLKVKVHGKDSPLKYWPKFDKKQLAISTLDFKIRHQLTQTHGLYRSSDKTGGYWKITMNDGSTYQSDLSKKFEYNTEKPPINIDEIKTIEAEIN
General information:
TITO was launched using:
RESULT:
Template:
3TSS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32746 for 1442 contacts (-22.7/contact) +
2D Compatibility (PS) -20033 + (NN) -7122 + (LL) 3276
1D Compatibility (HY) -22400 + (ID) 9300
Total energy: -88325.0 ( -61.25 by residue)
QMean score : 0.727
(partial model without unconserved sides chains):
PDB file :
Tito_3TSS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TSS-query.scw
PDB file :
Tito_Scwrl_3TSS.pdb
: