Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNYSSRQQPDKHWLRKVDWVLVATIAVLAIFSVLLINSAMGGGQYSANFGIRQIFYYILGAIFAGIIMFISPKKIKHYTYLLYFLICLLLIGLLVIPESPITPIINGAKSWYTFGPISIQPSEFMKIILILALARVVSRHNQFTFNKSFQSDLLLFFKIIGVSLV--PSILILLQNDLGTTLVLAAIIAGVMLVSG-ITWRILAPIFITGIVGAMTVILGILYAPALIENLLGVQLYQMGRINSWLDPYTYSSGDGYHLTESLKAIGSGQLLGKGYNHGEVYIPENHTDFIFSVIGEELGFIGSVILILIFLFLIFHLIRLAAKIEDQFNKIFIVGFVTLLVFHILQNIGMTIQLLPIT-GIPLPF-ISYGGSALWSMMTGIGIVLSIYYHEPKRYVDLYHPKSN |
| 4Z9N Chain:A ((9-328)) | -------ADTLSDVKAKG--------------------------------------FLQCGVNTGLLGFASPNDKGEWSG-FDVDYCRAVASAIF-----------GDPTKVKFTPLNAKE---RFTALQSGEVDVLIRNTTWTISRDTS----LGLDFAGINYYDGQGFMINSKKLAGINSALQLSGASICVQAGTTTELNMADYFRANKMEYNPVVFEKIEEANAAYDSGRCDAYTTDQSSLYGVRLALANPDDHVI---LPEIISKEPFGLTVRQGDARWADVVRWTHNALLNAEEYGITQANVEEMKKSDNPDIKRLLGA-EADTKIGTDLGLDKDWVVKIIKGVGNYGEIFERNIGSGSPLKIARGLNAQWNKG-------GLQYGIPVR---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4Z9N.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -324062 for 2703 contacts (-119.9/contact) +
2D Compatibility (PS) -32677 + (NN) 4621 + (LL) 6228
1D Compatibility (HY) 3200 + (ID) 2400
Total energy: -345090.0 ( -127.67 by residue)
QMean score : 0.095
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