Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MIKFVRNVVLFILTAIFLAFMLLVSYCMPHYSVAVISGVEVKRMNENENTPNNKEVKTLAR---------------DVYFVQTYDPKDQKSVTVYRNEDTRFGFPFYFKFNSADISALAQSLVNQQVEVQYYGWRINLFNMFPNVIFLKPLKESDEMSKPVFSWILYALLLVGFFISARSVCTLFKGKAH |
2J0Q Chain:I ((32-112)) | -----------------------------------------KHLDDDEDRKNPAYIPRKGLFFEHDLRGQEGRWEHDKFREDEQAPKSRQELIALYGYDIRSAH-------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2J0Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 14220 for 181 contacts (78.6/contact) +
2D Compatibility (PS) -4893 + (NN) -1902 + (LL) 12024
1D Compatibility (HY) 1200 + (ID) 400
Total energy: 20249.0 ( 111.87 by residue)
QMean score : 0.031
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