Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLFISATNTNAGKTTCARLLAQYCNACGVKTILLKPIETGVNDAIN--HSSDAHLFLQDNRLLDRSLTLKDISFYRYHKASAPLIAQQEEDPNAPIDTDNLTQRLHNFTKTYDLVIVEGAGGLCVPITLEENMLDFALKLKAKMLLISHDNLGLINDCLLNDFLLKSYQLDYKIAINLRGNNTAFYSVSLPYIELFNKRSNNPIVIFQQSLKELMSFALK
1BYI Chain:A ((5-163))
--FVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDA-LALQRNSSLQ--LDYATVNPYTFAEPTSPHIISAQE--GRPIESLVMSAGLRALEQQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLLGEIPWLAENPENAATGK
General information:
TITO was launched using:
RESULT:
Template:
1BYI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91128 for 1242 contacts (-73.4/contact) +
2D Compatibility (PS) -16567 + (NN) -4538 + (LL) 284
1D Compatibility (HY) -7200 + (ID) 2300
Total energy: -121449.0 ( -97.79 by residue)
QMean score : 0.458
(partial model without unconserved sides chains):
PDB file :
Tito_1BYI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BYI-query.scw
PDB file :
Tito_Scwrl_1BYI.pdb
: