Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLFSHKVFLEGCTNELRRICDSFVEGAMQDDLGQKLKSEALENMLKIAHDLENLEQETQYEMRKINEQLEEAKRLEKQVDMQDRHSQSEIDRLMREAKEHEREAKRRYGEYLKDKND
2YP4 Chain:A ((407-463))
------------------------------------------------QDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTD----SEMNKLFERTKKQLRENAEDMGNGCFKIYH
General information:
TITO was launched using:
RESULT:
Template:
2YP4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 12220 for 214 contacts (57.1/contact) +
2D Compatibility (PS) -6665 + (NN) -4785 + (LL) 4148
1D Compatibility (HY) -4400 + (ID) 800
Total energy: -282.0 ( -1.32 by residue)
QMean score : 0.459
(partial model without unconserved sides chains):
PDB file :
Tito_2YP4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YP4-query.scw
PDB file :
Tito_Scwrl_2YP4.pdb
: