Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANHKSAEKRIRQTIKRTERNRFYKTKVKNIIKAVREAVAINDVAKAQERLKIANKE---LHKFVSKGILKKNTASRKVSRLNASVKKIALA
2UXD Chain:T ((11-91))
-----SALKRHRQSLKRRLRNKAKKSAIKTLSK---KAVQLAQEGKAEEALKIMRKAESLIDKAAKGSTLHKNAAARRKSRLMRKVRQLLEA
General information:
TITO was launched using:
RESULT:
Template:
2UXD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 4053 for 470 contacts (8.6/contact) +
2D Compatibility (PS) -8063 + (NN) -1908 + (LL) 816
1D Compatibility (HY) -1200 + (ID) 1600
Total energy: -7902.0 ( -16.81 by residue)
QMean score : 0.543
(partial model without unconserved sides chains):
PDB file :
Tito_2UXD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2UXD-query.scw
PDB file :
Tito_Scwrl_2UXD.pdb
: