Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQKIGILGAMREEITPILELFGVDFEEIPLGGNVFHKGVYHNKEIIVAYSKIGKVHSTLTTTSMILAFGVQKVLFSGVAGSLVKDLKINDLLVATQLVQHDVDLSAFDHPLGFIPESAIFIETSGSLNALAKKIANEQHIALKEGVIASGDQFVHSKERKEFLVSEF-KASAVEMEGASVAFVCQKFGVPCCVLRSISDNADEKAGMSFDEFLEKSAHTSAKFLKSMVDEL
4GMH Chain:A ((4-230))
---IGIIGAMEEEVT-ILKNKLTQLSEISVAHVKFYTGILKDREVVITQSGIGKVNAAISTTLLINKFKPDVIINTGSAGALDESLNVGDVLISDDVKYHDADATAFGYEYGQIPQMPVAFQSSKPLIEKVSQVVQQQQLTAKVGLIVSGDSFIGSVEQRQKIKKAFPNAMAVEMEATAIAQTCYQFNVPFVVVRAVSDLANGEAEMSFEAFLEKAAVSSSQTVEALVSQL
General information:
TITO was launched using:
RESULT:
Template:
4GMH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135618 for 1844 contacts (-73.5/contact) +
2D Compatibility (PS) -24073 + (NN) -5398 + (LL) 252
1D Compatibility (HY) -16800 + (ID) 4050
Total energy: -185687.0 ( -100.70 by residue)
QMean score : 0.470
(partial model without unconserved sides chains):
PDB file :
Tito_4GMH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GMH-query.scw
PDB file :
Tito_Scwrl_4GMH.pdb
: