Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKLILAVFFTLTLSVSAKEVKIVFLETSDIHGRLFSYDYAVGEQKPNNGLTRIATLIKKQRAENKNVVLIDSGDLLQGNSAELFNDEPIHPLVRAENDLKFDIRVLGNHEFNFSKDFLEKNIKGFNGDVVNANIIKIADNKPFVKPYIIKKIDGVRVAVVGFLVPHVPTWEASTPEHFAGLEFLDAEEALKKTLSELKG--KYDILIGAFHLGRED--EKGGD--GIPDLAKKFP--QFDIIFAGHEH-----AVYNTK--------------VGKVHTIEPGAYGAYLAKGVVVFDTKTKKKIITTENLPTKDAPEDEELAKKYEYVDKKSKE--YANEVVGEVTKTFIDRPDFITGEEKITT------------MPTAALQETPVIELINKVQKYYAKADVSAAALFNFGANLKKGPFKRKDVAYIYKFANTLIGVRITGENLLKYMEWSYKFYNQLQPGDLTISFNENVRGYNFDMFSGVKYQVDVTKPAGQRIINPTINGKPINPKAVYKLAINNYRFGTLSTTLKLVTDADRYYDSYDALQDNGQIRDLIIKYITEEKNAKVTPELEHNWEIINYDFKNPLLEKLAEKLKEGSVKIPTSKDGRTLNVKSIKESEVE |
1OID Chain:A ((5-473)) | ------------------KTYKITVLHTNDHHGHFWRNEY--GEYGLAAQKTLVDGIRKEVAAEGGSVLLLSGGDINTGVPESDLQD--AEPDFRGMNLVGYDAMAIGNHEFDNPLTVLRQQEKWAKFPLLSANIYQKSTGERLFKPWALFKRQDLKIAVIGLTTDD--TAKIGNPEYFTDIEFRKPADEAKLVIQELQQTEKPDIIIAATHMGHYDNGEHGCNAPGDVEMARALPAGSLAMIVGGHSQDPVCMAAENKKQVDYVPGTPCKPDQQNGIWIVQAHEWGKYVGRADFEF-RNGEMKMVNYQLIPVN-------LKKKVTWEDGKSERVLYTPEIAENQQMISLLSPFQNKGKAQLEVKIGETNGRLEGDRDKVRFVQTNMGRLILAAQMDRTGADFAVMSGGGIRDSIEAGDISYKNVLKVQPFGNVVVYADMTGKEVIDYL----TAVAQMKPDSGA-----------YPQFANVSF---VAKDG--KLNDLKIKGEPVDPAKTYRMATLNFNATGGDGYPRLDNKCGYVNTGFIDAEVLKAYIQKSSPLDVSVYEPKGEVSWQ------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1OID.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -145155 for 3541 contacts (-41.0/contact) +
2D Compatibility (PS) -46134 + (NN) -12837 + (LL) 6732
1D Compatibility (HY) -18400 + (ID) 5550
Total energy: -221344.0 ( -62.51 by residue)
QMean score : 0.451
|
|
|