Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLKRAKTKAQQIKELLLKHYPNQTTELRHKNPYELLVATILSAQCTDARVNQITPKLFEKYPSVNDLALASLEEVKEIIQSVSYSNNKSKHLISMGAKVVKDFKGVIPSTQKELMSLDGVGQKTANVVLSVCFDANYIAVDTHVFRTTHR-LGLSNANTPIKTEEELSDLFKD-----NLSKLHHALILFGRYTCKAKNPLCDACFLKEFCVSKASFKA
1WEF Chain:A ((28-213))
------------------------------KTPYKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYYA-RARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYAVSGWPGKKEVENKLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIAAANNSW
General information:
TITO was launched using:
RESULT:
Template:
1WEF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84098 for 1367 contacts (-61.5/contact) +
2D Compatibility (PS) -19111 + (NN) -8871 + (LL) 2676
1D Compatibility (HY) -12000 + (ID) 2350
Total energy: -123754.0 ( -90.53 by residue)
QMean score : 0.525
(partial model without unconserved sides chains):
PDB file :
Tito_1WEF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WEF-query.scw
PDB file :
Tito_Scwrl_1WEF.pdb
: