Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDKMNKVVLHKEYSGFVRFFHWVRALSIFTLIATGFYIAYPFLQPNSSFYKGVYLLQAYVRSFHVMFGFLLISALIFRTYLFFTKESLMERRSFSQLLSPKAWIDQMKAYFLISDKPHTKGLYNPIQLVAYFTLVVLIVLMSLSGIVLYYNVYHEGLGAFLANAFKWFEA---LCGGLANVRFIHHLATWGFILFVPVHVYMVFFHSIRYDSSGADSMINGYGYTKE
2QJY Chain:A ((53-120))
---------------------------------------------------------------------------------------------------------------------------------------FCLVLQIVTGIVLA-MHYTPHVDL----AFASVEHIMRNVNGGFMLRYLHANGASLFFIAVYLHIFRGLYYGSYKAPREVTWIVGMLIYLAM
General information:
TITO was launched using:
RESULT:
Template:
2QJY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42832 for 337 contacts (-127.1/contact) +
2D Compatibility (PS) -6736 + (NN) -2543 + (LL) 12592
1D Compatibility (HY) -5600 + (ID) 800
Total energy: -45919.0 ( -136.26 by residue)
QMean score : -0.003
(partial model without unconserved sides chains):
PDB file :
Tito_2QJY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QJY-query.scw
PDB file :
Tito_Scwrl_2QJY.pdb
: