Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDREQIIALQHQRFATKKYDPNRRISEKDWEVLVEVGRLAPSSIGLEPWKMLLLKNERMKEDLKPMAWGGLSSLE----GASHFVIYLARKGVTYDSDYVKKVMHEVKKRDYDTHSRFA------------QIIKNFQENDIKLNSERSLFDWASKQTYIQMANMMMAAAMLGIDSCPIEGYDQEKVEAY--LEEKGYLNTAEFGVSVMASFGYRNQE----ITPKTRWKTEVIYEVIE
1OOQ Chain:A ((3-207))
-----IISVALKRHSTKAFDASKKLTPEQAEQIKTLLQYSPSSTNSQPWHFIVASTEEGKARVAKSAAGNYVFNERKMLDASHVVVFCAKTAM--DDVWLKLV---VDQEDAD--GRFATPEAKAANDKGRKFFADMHRKDLHDDAE-----WMAKQVYLNVGNFLLGVAALGLDAVPIEGFDAAILDAEFGLKEKGYTSL------VVVPVGHHSVEDFNATLPKSRLPQNITLTEV-
General information:
TITO was launched using:
RESULT:
Template:
1OOQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54421 for 1301 contacts (-41.8/contact) +
2D Compatibility (PS) -20069 + (NN) -10411 + (LL) 1884
1D Compatibility (HY) -11600 + (ID) 2950
Total energy: -97567.0 ( -74.99 by residue)
QMean score : 0.454
(partial model without unconserved sides chains):
PDB file :
Tito_1OOQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OOQ-query.scw
PDB file :
Tito_Scwrl_1OOQ.pdb
: