Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----------MNSPDVLLDSFKIALVKKDSKLAFSLI---ERLSLE-----QIKSLDLDALLSLKE-----MIAQSIELLE--KEKEELQSQMHKAKQIQKFLS----
4TYZ Chain:A ((1-109))
NIEGVFRKSFPDLAGETLLDSFNCAWVEGSALKQGYLFITPHWLCFQSTLAAAHFSIEYDEIKDIIKSKSVKMFENAIEVKTHLNDTIFLTNFLQRDQAYSALMSQWLK
General information:
TITO was launched using:
RESULT:
Template:
4TYZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10732 for 485 contacts (-22.1/contact) +
2D Compatibility (PS) -7913 + (NN) 6858 + (LL) 0
1D Compatibility (HY) -6400 + (ID) 800
Total energy: -18987.0 ( -39.15 by residue)
QMean score : 0.265
(partial model without unconserved sides chains):
PDB file :
Tito_4TYZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4TYZ-query.scw
PDB file :
Tito_Scwrl_4TYZ.pdb
: