Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFTVIFVAVLQAALGMLSVRQEICRNPSQPHDFKSLVIVTNFY
1VMC Chain:A ((44-58))
-----------------NNNRQVCIDPKLKWIQEYLEKALNK-
General information:
TITO was launched using:
RESULT:
Template:
1VMC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 651 for 39 contacts (16.7/contact) +
2D Compatibility (PS) -1692 + (NN) -2785 + (LL) 2552
1D Compatibility (HY) -400 + (ID) 100
Total energy: -1774.0 ( -45.49 by residue)
QMean score : 0.558
(partial model without unconserved sides chains):
PDB file :
Tito_1VMC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VMC-query.scw
PDB file :
Tito_Scwrl_1VMC.pdb
: