Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQ-EEGVREAIAKLDNTDFMGRTIRVTEANPKKS
2CQB Chain:A ((8-86))
---LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMRI
General information:
TITO was launched using:
RESULT:
Template:
2CQB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54195 for 503 contacts (-107.7/contact) +
2D Compatibility (PS) -8444 + (NN) -3466 + (LL) 192
1D Compatibility (HY) -6000 + (ID) 1350
Total energy: -73263.0 ( -145.65 by residue)
QMean score : 0.692
(partial model without unconserved sides chains):
PDB file :
Tito_2CQB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CQB-query.scw
PDB file :
Tito_Scwrl_2CQB.pdb
: