Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVLEVKNLSFKYSQKLILDKLSFSVPKNSITSILAPNGSGKTTLLKCLLGLLKPLEETEIKACNKDILPLKPYEKAKL-IAYIPQVEYYAFNFSVLDFVLMGK----ATHLN-LFA---MPKAKH-IKEATSVLERLDLESLKDQGINDLSGGQRQMVLLARSLLQRTPLLLLDEPTSAL------DLKNQALFFDAIKDEMKKRELSVLVNIHDPNLVARHSTHVVMLKDKKLFLQASTPIAMTSHNLSALYDTPLEAIWHDDKLVVYAL
1GAJ Chain:A ((7-235))
-ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA-DEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVL-------ELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNVLSDPKVVEIYIGE-----------
General information:
TITO was launched using:
RESULT:
Template:
1GAJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141086 for 1705 contacts (-82.7/contact) +
2D Compatibility (PS) -22463 + (NN) -5989 + (LL) 1512
1D Compatibility (HY) -17200 + (ID) 3300
Total energy: -188526.0 ( -110.57 by residue)
QMean score : 0.468
(partial model without unconserved sides chains):
PDB file :
Tito_1GAJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GAJ-query.scw
PDB file :
Tito_Scwrl_1GAJ.pdb
: