Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAVITGASSGIGLECVLMLLN---QGYKVYALSR---------HATLCVALNHALCECVDIDVSDSNALKEVFLNISAKEDHCDVLINSAGYGVFGSVEDTPIEEVKKQFSVNFFALCEVVQLCLPLLKNKPYSKIFNLSSIAGRVSMLFLGHYSASKHALEAYSDALRLELKPFNVQVCLIEPGPVKSNWEKTAFENDERKDSVYALEVNAAKSFYS------GVYQKAL-NAKEVAQKIVFLSMSHKIKARYLIGLKTQLLLALYQILPSSWYDSLFRLVVLGRKRDA |
1JTV Chain:A ((6-265)) | --LITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVT--EGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHT------GSPEEVLDRT---DIHTFHRFYQYLAHSKQVFREAAQNPEEVAEVFLTALRAPKPTLRYFT---TERFLPLLRMRLDDPSGSNYVTAMHREVFG- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1JTV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -164574 for 1833 contacts (-89.8/contact) +
2D Compatibility (PS) -24281 + (NN) -7602 + (LL) 1656
1D Compatibility (HY) -16400 + (ID) 3800
Total energy: -215001.0 ( -117.29 by residue)
QMean score : 0.498
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