Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEILVLNLGSSSIKFKLFDMKENKPLASGLAEKIGEEIGQLKIKS----HLHHNDQELKEKLVIKDHAIGLLMIRENLTKMGIIKDFNQIDAIGHRVVQGGDKFHAPVLVDEKVMREIGNLSILAPLHNPANLAGIEFVQKAHPHIPQIAVFDTAFHASMPSYAYMYALPYELYEKYQIRRYGFHGTSHHYVAKEAAKFLNIPYEEFNAISLHLGNGSSAAAIQNGKSVDTSMGLTPLEGLIMGTRCGDIDPTVVEYIAQCANKSLEEVMKILNHESGLKGICG-DNDARNIEVRKEKGDKQAKLAFEMCVYRIKKYIGAYMVVLKKVDAIIFTGGLGENYSALRESVCEGLENLGIALHKPTNDNPGSALVNLSQPN-TKIQILRIPTDEELEIALQAKEMVEKIKVV |
| 4FWM Chain:A ((20-402)) | --VLVINCGSSSIKFSVLDVATCDVLMAGIADGMNTENAFLSINGDKPINLAHSNYEDALK------AIAFELEKRDLT--------DSVALIGHRIAHGGELFTQSVIITDEIIDNIRRVSPLAPLHNYANLSGIDAARHLFPAVRQVAVFDTSFHQTLAPEAYLYGLPWEYFSSLGVRRYGFHGTSHRYVSRRAYELLDLDEKDSGLIVAHLGNGASICAVRNGQSVDTSMGMTPLEGLMMGTRSGDVDFGAMAWIAKETGQTLSDLERVVNKESGLLGISGLSSDLRVLEKAWHEGHERARLAIKTFVHRIARHIAGHAASLHRLDGIIFTGGIGENSVLIRQLVIEHLGVLGLTLDVEMNKQPNSHGERIISANPSQVICAVIPTNEEKMIALDAIHLGNVKA-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4FWM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -184876 for 3178 contacts (-58.2/contact) +
2D Compatibility (PS) -40485 + (NN) -18670 + (LL) 1712
1D Compatibility (HY) -29200 + (ID) 7850
Total energy: -279369.0 ( -87.91 by residue)
QMean score : 0.467
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