Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKVVGEIKLQIPAGKANPSPPVGPALGQRGVNIMEFCKAFNERTKDMGSFNIPVIITVYQDKSFTFITKKPPVTDLIKKASGVEKGSDNPLKNKIAKLTHKQVEEIAQLKMEDLNTSTMEAAKKIVMGSARSMGVEVVD
2H8W Chain:A ((2-139))
--KKVVAVVKLQLPAGKATPAPPVGPALGQHGANIMEFVKAFNAATANMGDAIVPVEITIYADRSFTFVTKTPPASYLIRKAAGLEKGAHKPGREKVGRITWEQVLEIAKQKMPDLNTTDLEAAARMIAGSARSMGVEVVG
General information:
TITO was launched using:
RESULT:
Template:
2H8W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24992 for 908 contacts (-27.5/contact) +
2D Compatibility (PS) -14652 + (NN) -3918 + (LL) 352
1D Compatibility (HY) -12000 + (ID) 4250
Total energy: -59460.0 ( -65.48 by residue)
QMean score : 0.405
(partial model without unconserved sides chains):
PDB file :
Tito_2H8W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2H8W-query.scw
PDB file :
Tito_Scwrl_2H8W.pdb
: