Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIDRKLLLQDFDKVALSLKKRNHAMDDELERLREAIAHYKKQLIELEGLQAFQNKVSKEFGIKMAQKMDTSDLKKELEN------------NKIKLNELSKS---VGEA-----------EQEMDLKLSIIPNLVDEKTPLGASEEDNIEIKKILTPRNFTFKPK-EHFELAQQNGWIDFESGVKLAKSRFSVIRGFGAKIYRALIHLMLDFNEKNGFEIIYTPALVNEKMLFGTGQLPKFKEDVFKI-ENENLYLIPTAEVTLTNLYNDTIISVENLPIKMTAHTPCFRSEAGSAGKDTRGMIRQHQFDKVELVAITHPKESDA--MQEHMLESASEILKALELPHRFVQLCSGDLGFSASNTIDIEVWLPGQNCYREISSVSNTRDFQARRAKIRFKENQKN----QLVHTLNGSSLAVGRTMVALMENHQQADGSIHIPKALEKYL |
| 3VBB Chain:A ((33-460)) | ----------------------------VDQLVKADSEWRRCRFRADNLNKLKNLCSKTIGEKMKKKE----DESVPENVLSFDDLTADALANLKVSQIKKVRLLIDEAILKCDAERIKLEAERFENLREIGNLLHPSVPISNDEDVDNKVERIWG--DCTVRKKYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQLS-FDEELYKVI--DEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEVGS----TRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYHIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQT---MDKVEFVHMLNATMCATTRTICAILENYQTEKG-ITVPEKLKEFM |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VBB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -124620 for 2823 contacts (-44.1/contact) +
2D Compatibility (PS) -39744 + (NN) -21546 + (LL) 2304
1D Compatibility (HY) -28400 + (ID) 6100
Total energy: -218106.0 ( -77.26 by residue)
QMean score : 0.452
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