Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVIFLKDVKGKGKKGETKNVADGYANNFLIKNGYAVEANNAALSTLSAQKKKEDKLAAEELAEAKALKEKMENL-TVELKAKSGEGGRLFGSITSKQIAQTLEKTHGIKIDKRKMDLPEAI-RALGHTKVPVKLHHEVTATLDVHVSEE
5AKA Chain:H ((1-149))
MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNIEFFEARRAELEAKLAEVLAAANARAEKINALETVTIASKAGDEGKLFGSIGTRDIADAV-TAAGVEVAKSEVRLPNGVLRTTGEHEVSFQVHSEVFAKVIVNVVAE
General information:
TITO was launched using:
RESULT:
Template:
5AKA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29997 for 935 contacts (-32.1/contact) +
2D Compatibility (PS) -14605 + (NN) 3325 + (LL) 104
1D Compatibility (HY) -12800 + (ID) 2750
Total energy: -56723.0 ( -60.67 by residue)
QMean score : 0.323
(partial model without unconserved sides chains):
PDB file :
Tito_5AKA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5AKA-query.scw
PDB file :
Tito_Scwrl_5AKA.pdb
: