Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LAKNTHMNVTVDFTNWGASKYDLRIPVHQPIKALIINLAETLKIDYKDLSKCTIKTTNKAILLSDDDKLTNFQIADGDILEIL
1J8C Chain:A ((29-100))
--EPKIIKVTVKTP---KEKEEFAVPENSSVQQFKEAISKRFKSQ-----TDQLVLIFAGKILKDQDTLIQHGIHDGLTVHL-
General information:
TITO was launched using:
RESULT:
Template:
1J8C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33734 for 476 contacts (-70.9/contact) +
2D Compatibility (PS) -7594 + (NN) -1708 + (LL) 628
1D Compatibility (HY) -2400 + (ID) 650
Total energy: -45458.0 ( -95.50 by residue)
QMean score : 0.395
(partial model without unconserved sides chains):
PDB file :
Tito_1J8C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1J8C-query.scw
PDB file :
Tito_Scwrl_1J8C.pdb
: