Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKEVNYREDDWREAKSALAPFAAANWVGGLFNNLEKVSKNMEEAEEDVQELDSDHAISFQHTNYRGKYSAIEDDLMVLYKFSCHAGEKMETLVDQPFYEKLDAFVDGMQDLSISTYSTTNRIGAKSKQTYTTTSGGSQVIESIKEGATIEDLMNGDNFYANQMQLQYRDWQRANPDQDVSKKDFQMGMLHSRAFEYKSIKDEQQEKEFWVNIVATVVIVGVSIFCPPAGLALAVGYGSLEAGSAISGKDWVSGRELSTEERALRGGLALLDIVPGVKALSTGAKAASAGSKLVRVGDNVLAGSKNVGKGTIDNGIQAGKQAMDLRLANAKKVSEAVQKKLTKDLDDIGTMAKTIQNKTKETFTLPPREQLAFARGGSIPEQSATGAAAIAAKKKLKDIMQNMDNLNVKGGGKDDIIEQNKSLKFTSLEESEKWGIDGFSVWRNSLSSREIQAIRDYTDIWHYGNMNGYL--RGSVEKLAPDNAERIKNLSSALEKAELPDNIILYRG----------TSSEILDNFLDLKNLN--YQNLVGKTIEEKGFMSTT--TISNQTFSGN-VTMKINAPKGSKGAYLAHFSETPEEAEVLFNIGQKMLIKEVTELNGKIEIIVDLL |
4H0V Chain:A ((228-399)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------WGKENYSDWSNKLTPNELADVNDYMR-GGYTAINNYLISNGPLNNPNPELDSKVNNIENALKLTPIPSNLIVYRRSGPQEFGLTLTSPEY--DFNKIENIDAFKEKWEGKVITYPNFISTSIGSVNMSAFAKRKIILRINIPKDSPGAYLSAIPGYAGSYEVLLNHGSKFKINKV-------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4H0V.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -32819 for 1022 contacts (-32.1/contact) +
2D Compatibility (PS) -16309 + (NN) -1932 + (LL) 28652
1D Compatibility (HY) -13200 + (ID) 2600
Total energy: -38208.0 ( -37.39 by residue)
QMean score : 0.440
|
|
|